PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47587.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 86aa    MW: 10249.8 Da    PI: 7.358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47587.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131656455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++ e+ErrRR+++ +++  Lr+l+ k           a+i+e A+ YI   q
  KHN47587.1 16 KNLEVERRRREKLSTRLLMLRSLMNK-----------ATIVEDAITYIETQQ 56
                56699*****************9755...........589999999998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.0E-71477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-61460No hitNo description
SuperFamilySSF474594.19E-111472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-51861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MRKKNYECDT QVFKSKNLEV ERRRREKLST RLLMLRSLMN KATIVEDAIT YIETQQNIVQ  60
SLSYELHEME ATSEEIKPKK EEIDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025ERRRRE
22126RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1859598e-50AC185959.13 Glycine max cultivar Williams 82 clone gmw1-58k3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148286.12e-31hypothetical protein PHAVU_006G195500g
SwissprotO819002e-16DYT1_ARATH; Transcription factor DYT1
TrEMBLA0A0B2STK83e-56A0A0B2STK8_GLYSO; Transcription factor DYSFUNCTIONAL TAPETUM 1
STRINGGLYMA13G32370.21e-28(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-11bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]